SNP Profiles of SPEC 160 /9 View Data

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_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
1._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
2._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
3._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
4._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
5._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
6._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
7._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
8._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
9._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
10._RUQ_51	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	GG	CC	CT
11._RUQ_51	_	_	AC	GT	CT	AC	CG	AG	CT	AT	_	GG	CC	CT
12._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	_	CC	CT
13._RUQ_51	_	_	AC	_	_	_	_	AG	_	_	_	_	AC	_
14._RUQ_51	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
1._SPEC_160_/9	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
2._SPEC_160_/9	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
3._SPEC_160_/9	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
4._SPEC_160_/9	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
5._GC-08-267-8-39	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
6._GC-08-267-8-39	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
7._GC-08-267-8-39	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
8._GC-08-267-8-39	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
9._GC-08-267-8-39	GT	CC	AC	CC	GG	GT	CG	CC	TT	GG	AA	CC	AG	CT
10._RUQ_51	GT	CC	AC	CC	AG	GT	CG	CC	TT	GG	AA	CC	AG	CT
11._RUQ_51	GT	CC	AA	CC	_	GT	CG	CC	_	_	_	_	AG	CT
12._SPEC_160_/9	_	CC	AT	CC	AG	GT	CG	CC	TT	GG	_	CC	_	_
13._RUQ_51	_	CC	AC	_	AG	GT	CG	_	_	_	_	_	AG	_
14._RUQ_51	AC	CC	AC	GG	_	AC	CG	GG	AA	GG	AA	GG	AG	AG

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_Input profile	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
1._SPEC_160_/9	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
2._SPEC_160_/9	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
3._SPEC_160_/9	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
4._SPEC_160_/9	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
5._GC-08-267-8-39	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
6._GC-08-267-8-39	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
7._GC-08-267-8-39	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
8._GC-08-267-8-39	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
9._GC-08-267-8-39	AA	AA	CC	CT	GG	CC	AA	TT	CT	CG	GG	CT	X_X	X_X
10._RUQ_51	AA	AA	CC	CT	GG	CC	AA	TT	CT	_	GG	CT	X_X	X_X
11._RUQ_51	_	_	_	_	GG	_	_	_	CT	CG	GG	_	X_X	X_X
12._SPEC_160_/9	AA	AA	_	CT	GG	CC	AA	TT	CT	GG	GG	_	X_X	X_X
13._RUQ_51	AA	_	CC	_	GG	_	_	_	_	CG	_	_	X_X	X_X
14._RUQ_51	AA	AA	_	_	_	GG	AA	AA	AG	CC	GG	AG	X_X	X_X

Input profile: SPEC_160_/9

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Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._SPEC_160_/9

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

2._SPEC_160_/9

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

3._SPEC_160_/9

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

4._SPEC_160_/9

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

5._SPEC_160_/9 GC-08-267-8-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._SPEC_160_/9 GC-08-267-8-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._SPEC_160_/9 GC-08-267-8-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._SPEC_160_/9 GC-08-267-8-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._SPEC_160_/9 GC-08-267-8-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._SPEC_160_/9 RUQ_51

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._SPEC_160_/9 RUQ_51

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._SPEC_160_/9

93.9 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña, Lot 8, Row 24 4_6

Dapeng Zhang, 2016

13._SPEC_160_/9 RUQ_51

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._SPEC_160_/9 RUQ_51

57.4 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520